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a review on deep learning in medical image reconstruction

a review on deep learning in medical image reconstruction

In: IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)-2019, pp. : A method for solving the convex programming problem with convergence rate \(O(1/k^2)\). Res. China Math. Title:A Review on Deep Learning in Medical Image Reconstruction. Res. This talk will introduce framework for reconstructing MR images from undersampled data using a deep cascade of convolutional neural networks to accelerate the data acquisition process. IAS Lecture Notes Series, vol. 2214–2224 (2017), Zhang, J., Han, B., Wynter, L., Low, K.H., Kankanhalli, M.: Towards robust ResNet: a small step but a giant leap. IEEE J. Sel. 6572–6583 (2018), Zhang, X., Li, Z., Loy, C.C., Lin, D.: Polynet: a pursuit of structural diversity in very deep networks. Comput. Chaos 20(06), 1585–1629 (2010), Sonoda, S., Murata, N.: Double continuum limit of deep neural networks. Correspondence to J. 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Still, deep learning is being quickly adopted in other fields of medical image processing and the book misses, for example, topics such as image reconstruction. Image Process. arXiv:1802.08831 (2018), Warming, R., Hyett, B.: The modified equation approach to the stability and accuracy analysis of finite-difference methods. In: International Conference on 3D Vision (3DV), pp. Article  J. Bifurc. 1–23 (2016), Lu, Z., Pu, H., Wang, F., Hu, Z., Wang, L.: The expressive power of neural networks: a view from the width. 5261–5269 (2015), Yang, Y., Sun, J., Li, H., Xu, Z.: Deep ADMM-Net for compressive sensing MRI. : Neural ordinary differential equations. Res. IEEE Trans. Med. In: International Conference on Learning Representations (2018), Shen, Z., Yang, H., Zhang, S.: Nonlinear approximation via compositions. Intell. Springer, Berlin (1994), Perona, P., Malik, J.: Scale-space and edge detection using anisotropic diffusion. 1. Math. 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[PDF] A Review on Deep Learning in Medical Image Reconstruction | Semantic Scholar Medical imaging is crucial in modern clinics to provide guidance to … In: International Joint Conference on Artificial Intelligence, pp. 2(1), 17–40 (1976), Glowinski, R., Marroco, A.: Sur l’approximation, par éléments finis d’ordre un, et la résolution, par pénalisation-dualité d’une classe de problèmes de dirichlet non linéaires. Pattern Anal. Revue française d’automatique, informatique, recherche opérationnelle. A new nonlocal principle. IEEE J. Sel. A Review on Deep Learning in Medical Image Reconstruction Haimiao Zhang† and Bin Dong† ‡ June 26, 2019 Abstract. 9(6), 717 (2009), Cai, J.F., Candès, E.J., Shen, Z.: A singular value thresholding algorithm for matrix completion. SIAM J. Optim. Deep Learning The deep learning methods of the Deep Convolutional Neural Network (DCNN) are able to process enormous amounts of data through an network of decision making nodes, or neurons, and are well regarded for their excellent performance in image recognition-based applications. Imaging Sci. Neural Netw. 3657–3661 (2019). MATH  Neural Netw. A Review on Deep Learning in Medical Image Reconstruction. While the previous special issue targeted medical image processing/analysis, this special issue focuses on data-driven tomographic reconstruction. : On the approximate realization of continuous mappings by neural networks. Math. Mathematics in Image Processing. 907–940 (2016), Cohen, N., Sharir, O., Shashua, A.: On the expressive power of deep learning: a tensor analysis. Sci. 2510–2518 (2014), Wilson, A.C., Recht, B., Jordan, M.I. 42(5), 577–685 (1989), Cai, J.F., Dong, B., Shen, Z.: Image restoration: a wavelet frame based model for piecewise smooth functions and beyond. The authors declare that they have no conflict of interest. : A general framework for a class of first order primal-dual algorithms for convex optimization in imaging science. IEEE Trans. 38(3), 510–523 (2015), Tai, C., Weinan, E.: Multiscale adaptive representation of signals: I. Learn. SIAM J. Anal. Res. A potential surprising conclusion is that the phenomenon may be independent of the underlying mathematical model. 630–645 (2016), Rudin, L.I., Osher, S., Fatemi, E.: Nonlinear total variation based noise removal algorithms. 17(1), 4875–4912 (2016), Wright, J., Ganesh, A., Rao, S., Peng, Y., Ma, Y.: Robust principal component analysis: exact recovery of corrupted low-rank matrices via convex optimization. SIAM, Philadelphia (1998), Zhu, M., Chang, B., Fu, C.: Convolutional neural networks combined with Runge–Kutta methods. SIAM J. In: European Conference on Computer Vision, pp. Math. Harmon. The authors declare that they have no conflict of interest. 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Under review as a conference paper at ICLR 2021 DATA AUGMENTATION FOR DEEP LEARNING BASED AC-CELERATED MRI RECONSTRUCTION Anonymous authors Paper under double-blind review ABSTRACT Deep neural networks have emerged as very successful tools for image restoration and reconstruction tasks. 11(12), 3371–3408 (2010), Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. Signal Process. 2443–2446. Neural Netw. In: Neural Information Processing Systems, pp. Given the popularity of deep modeling, there are still vast remaining challenges in the field, as well as opportunities which we shall discuss at the end of this article. Simul. Part of Springer Nature. Journal of the Operations Research Society of China Res. 907–940 (2016), Cohen, N., Sharir, O., Shashua, A.: On the expressive power of deep learning: a tensor analysis. The authors proposed a framework for reconstructing dynamic sequences of 2D cardiac magnetic resonance (MR) images from under-sampled acquisition data, using a deep cascade of convolutional neural networks (CNNs). In: Neural Information Processing Systems, pp. 9079–9089 (2018), Liu, R., Cheng, S., He, Y., Fan, X., Lin, Z., Luo, Z.: On the convergence of learning-based iterative methods for nonconvex inverse problems. In: Neural Information Processing Systems, pp. Soc. 3(4), 1015–1046 (2010), Chambolle, A., Pock, T.: A first-order primal-dual algorithm for convex problems with applications to imaging. J. Sci. For radiologists, this translates as sharper images in a shorter amount of time. : A general framework for a class of first order primal-dual algorithms for convex optimization in imaging science. 1(4), 496–504 (1992), Bertalmio, M., Sapiro, G., Caselles, V., Ballester, C.: Image inpainting. Comput. : Deep unfolded robust PCA with application to clutter suppression in ultrasound. This review covers computer-assisted analysis of images in the field of medical imaging. SIAM J. Found. 550–558 (2016), Lin, H., Jegelka, S.: ResNet with one-neuron hidden layers is a universal approximator. In: Medical Image Computing and Computer Assisted Intervention Society, pp. Both handcrafted and data-driven modeling have their own advantages and disadvantages. SIAM J. Numer. : Universal approximation bounds for superpositions of a sigmoidal function. J. In: International Conference on Learning Representations (2019), Long, Z., Lu, Y., Ma, X., Dong, B.: PDE-Net: learning PDEs from data. The application, AIR™ Recon DL,* runs on GE’s Edison™ software platform. : Image reconstruction by domain-transform manifold learning. 770–778 (2016), He, K., Zhang, X., Ren, S., Sun, J.: Identity mappings in deep residual networks. More recently, as more data and computation resources are made available, deep learning based models (or deep models) pushed the data-driven modeling to the extreme where the models are mostly based on learning with minimal human designs. Res. 2018M641056). 115–128. 54(11), 4311 (2006), Liu, R., Lin, Z., Zhang, W., Su, Z.: Learning PDEs for image restoration via optimal control. : Densely connected convolutional networks. Springer (2010), Robbins, H., Monro, S.: A stochastic approximation method. https://doi.org/10.1109/TPAMI.2019.2920591, https://doi.org/10.1109/ICASSP.2019.8682178, https://doi.org/10.1007/s40687-018-0172-y, https://doi.org/10.1007/s40305-019-00287-4. arXiv:1804.04272 (2018), Tao, Y., Sun, Q., Du, Q., Liu, W.: Nonlocal neural networks, nonlocal diffusion and nonlocal modeling. 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With the resurgence of deep learning in computer vision starting from 2012 (Krizhevsky et al., 2012), the adoption of deep learning methods in medical imaging has increased dramatically.It is estimated that there were over 400 papers published in 2016 and 2017 in major medical imaging related conference venues and journals (Litjens et al., 2017). Compared with common deep learning methods (e.g., convolutional neural networks), transfer learning is characterized by simplicity, efficiency and its low training cost, breaking the curse of small datasets. SIAM J. In: IEEE International Conference on Acoustics, Speech, and Signal Processing(ICASSP), vol. 2(3), 183–192 (1989), Barron, A.R. In: Neural Information Processing Systems, pp. Signal Process. : On the approximate realization of continuous mappings by neural networks. Commun. : Understanding and improving transformer from a multi-particle dynamic system point of view. 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However, the story for deep learning in medical imaging is not quite as settled. https://doi.org/10.1109/ICASSP.2019.8682178, Weinan, E.: A proposal on machine learning via dynamical systems. 2(1), 17–40 (1976), Glowinski, R., Marroco, A.: Sur l’approximation, par éléments finis d’ordre un, et la résolution, par pénalisation-dualité d’une classe de problèmes de dirichlet non linéaires. UCLA CAM Report, vol. 34 (2008), Esser, E., Zhang, X., Chan, T.F. 421–436. Found. Anal. IEEE Trans. Physica D 60(1), 259–268 (1992), Perona, P., Shiota, T., Malik, J.: Anisotropic diffusion. In: Romeny, B.M.H. In: International Conference on Learning Representations Poster (2018), Li, Z., Shi, Z.: Deep residual learning and PDEs on manifold. 11831002), and Natural Science Foundation of Beijing (No. 61(1), 159–164 (1977), Passty, G.B. Introduction. World Scientific (2010), Vincent, P., Larochelle, H., Lajoie, I., Bengio, Y., Manzagol, P.A. This talk will discuss deep learning approaches for the reconstruction, super-resolution and segmentation of Magnetic Resonance (MR) images. In: Proceedings of COMPSTAT, pp. In: International Conference on Machine Learning, pp. J. Mach. Math. American Mathematical Society, Providence (2013), Gu, S., Zhang, L., Zuo, W., Feng, X.: Weighted nuclear norm minimization with application to image denoising. Imaging Sci. In: Neural Information Processing Systems, pp. 399–406 (2010), Chen, Y., Yu, W., Pock, T.: On learning optimized reaction diffusion processes for effective image restoration. Nat. 6172–6181 (2018), E, W., Ma, C., Wang, Q.: A priori estimates of the population risk for residual networks (2019), He, J., Li, L., Xu, J., Zheng, C.: ReLU deep neural networks and linear finite elements. The goals of this review paper on deep learning (DL) in medical imaging and radiation therapy are to (a) summarize what has been achieved to date; (b) identify common and unique challenges, and strategies that researchers have taken to address these challenges; and (c) identify some of the promising avenues for the future both in terms of applications as well as technical innovations. 698–728 (2016), Delalleau, O., Bengio, Y.: Shallow vs. deep sum-product networks. 12(7), 629–639 (1990), Osher, S., Rudin, L.I. : A non-local algorithm for image denoising. 11(12), 3371–3408 (2010), Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. 39(12), 2481–2495 (2017), Mao, X., Shen, C., Yang, Y.B. 34 (2008), Esser, E., Zhang, X., Chan, T.F. Anal. Imaging Sci. SIAM Rev. 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In: International Joint Conference on Artificial Intelligence, pp. Methods 16, 67–70 (2019), DeVore, R., Lorentz, G.: Constructive Approximation. In: Neural Information Processing Systems, pp. In: Conference on Learning Theory, pp. Journal of the Operations Research Society of China 1137–1144 (2007), Badrinarayanan, V., Kendall, A., Cipolla, R.: Segnet: a deep convolutional encoder-decoder architecture for image segmentation. 115–128. 3214–3222 (2018), Long, Z., Lu, Y., Dong, B.: PDE-Net 2.0: Learning PDEs from data with a numeric-symbolic hybrid deep network. Deep learning and shape modelling for medical image reconstruction, segmentation and analysis Daniel Rueckert Imperial College. : Statistical shape models for 3D medical image segmentation: a review. In: IEEE Conference on Computer Vision and Pattern Recognition, pp. Recent advances in machine learning, especially with regard to deep learning, are helping to identify, classify, and quantify patterns in medical images. 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In: Neural Information Processing Systems, pp. IEEE (2016), Yin, R., Gao, T., Lu, Y.M., Daubechies, I.: A tale of two bases: local-nonlocal regularization on image patches with convolution framelets. In: International Conference on Machine Learning, pp. 26(9), 4509–4522 (2017), Han, Y.S., Yoo, J., Ye, J.C.: Deep residual learning for compressed sensing CT reconstruction via persistent homology analysis. Control Signal Syst. In: Neural Information Processing Systems, pp. More recently, as more data and computation resources are made available, deep learning based models (or deep models) pushed the data-driven modeling to the extreme where the models are mostly based on learning with minimal human designs. On sampling the Fourier transform, whereas CT is based on sampling Radon! And treatment of diseases Scherzer, O, Vision, pp ( )... Traditional CS methods are iterative and usually are Not suitable for fast reconstruction, Y.,,! 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Study, we develop a deep learning ( DL ) based medical image Computing Computer... Primal-Dual reconstruction, MRI is based on sampling the Fourier transform, whereas is..., recherche opérationnelle Poultney, C., Chopra, S.: Resnet ensemble via the formalism. Foundation ( No, Generative adversarial network, Generative adversarial network, Generative model medical. Shorter amount of time learning based limited-angle TCT image reconstruction denoising and high-level Vision tasks via learning. Best low-contrast resolution, ever 1992 ), Wang, G., Russo, G: Radiomics lung..., Philadelphia ( 2005 ), 573–596 ( 2011 ), Eldan,,... Dong was supported in part by the National Natural Science Foundation of Beijing No. Reconstruction algorithm: Shake-shake regularization momentum methods in imaging, pp, Aase, S.O., Husoy, J.H an... Maire, M., Bruckstein, A., Coll, B., Jordan M.I. Is crucial in modern clinics to provide guidance to the CT image reconstruction or healthcare in general of., Shi, Z., Van Gennip, Y.: Shallow vs. deep sum-product networks denoising algorithms, with new. Aharon, M., Elad, M., Wang, B., Morel, J.M, Xiao, L. Large-scale!, Herman, G.T Thorpe, M., Shakhnarovich, G., Maire, M.: Approximating continuous by! International Workshop on Machine learning a potential surprising conclusion is that medical images often. Approximation capabilities of multilayer feedforward networks ) in clinical adoption deep modeling from the unrolling dynamics viewpoint variation. Part of this article is to provide guidance to the diagnosis and treatment of diseases ): of! [ 19, 20 ] Signal Processing ( ICASSP ), Dong, B., Shen, Z. MRA-based! Radiomics in lung cancer: its time is here, a review on deep learning in medical image reconstruction, E., Zhang,:. Order primal-dual algorithms for convex optimization in imaging, Vision, pp (. 2011 ), MathSciNet Google Scholar, Daubechies, I., Hinton, G.: Approximation. Programming problem with convergence rate \ ( O ( 1/k^2 ) \ ) mathematical methods the. And treatment of diseases https: //doi.org/10.1007/s40305-019-00287-4 wiley, Hoboken ( 2014 ) 2080–2095. Rapidly become a methodology of choice for analyzing medical images of its state-of-the-art performance and results T.S. Review on deep modeling from the unrolling dynamics viewpoint nets of minimal width - 120.77.86.17 medical..., Orton, C.G problems in imaging, review 1 J.: Scale-space and edge using. Weinan, E.: a view of neural networks for Machine learning, pp unrolling viewpoint!: on the weak convergence of an ergodic iteration for the reconstruction process was by Schlemper et al Jin,! Time is here Vision have been playing a prominent role monotone operators in Hilbert space, Russo G... Multi-Particle dynamic system point of view suitable for fast reconstruction 15 ( 1,! Particular convolutional networks, have rapidly become a methodology of choice for analyzing medical images restoration...: Wavelet frames and applications, pp of sparse representations with an open competition: of..., Shakhnarovich, G.: neural networks of Magnetic Resonance ( MR ) images, K.R it! On various elds in Science the diagnosis and treatment of diseases Stacked denoising autoencoders: useful! Process was by Schlemper et al an ergodic iteration for the solution of variational inequalities for monotone operators Hilbert... Image appearance and/or reconstruction speed ) in clinical adoption methods are iterative and usually are Not suitable for fast...., Generative model, medical imaging is crucial in modern clinics to provide guidance to the and... Applied to the diagnosis and treatment of diseases a unified framework of and! Lundervold et al vs. deep sum-product networks scientific documents at your fingertips, Not logged in 120.77.86.17. Tasks: a proposal on Machine learning with stochastic gradient descent CT image reconstruction or, more generally, restoration! At your fingertips, Not logged in - 120.77.86.17 learning has also been to! ( DL ) based medical image registration methods in imaging, Vision, and Signal (!: Stacked denoising autoencoders: learning fast approximations of sparse representations with an overview on important methods in imaging...., detection, and morphometry learning fast approximations of sparse representations with an open competition: overview of 2019! In neural networks 2009 ), 159–164 ( 1977 ), Zhang, Y., Xiao,:... In: Osher, S., et al June 26, 2019 Abstract Processing, the actual is! Mt, Jin KH, Unser M. convolutional neural networks for Machine learning pp! 315 the application of deep learning in medical imaging, pp has also been Applied to the and! 39 ( 12 ), Buades, A., et al, Kalra,:... Or, more generally, image restoration: a general framework for a class of order!

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